Fruit Tree Pests and Disease
On This Page
- Fruit Tree Diseases and Pests Directory
- Fruit Tree Diseases: Rust, Scab, Fire Blight, Black Knot
- Fruit Tree Pests: Codling Moth, Maggot Fly
- General Tips for Pest & Disease Management
- Recommended Reading
Fruit Tree Diseases and Pests Directory
Click the images to jump to each section, detailing the appearance, impact, prevention, and treatment of each disease or pest.
Fruit Tree Disease – Rust
What does Rust mean for Not Far From The Tree’s Fruit Picking Program? Rusts do not pose a significant issue to fruit health. Twigs and smaller branches may become disfigured, but rust diseases do not generally kill trees. A fruit tree may not produce as much fruit or grow as well if rust diseases are not treated.

Rust Physical Manifestations Leaves show small orange spots. Over time, these spots enlarge and turn red. In late summer, these spots become blisters which burst into spores. Leaves can drop early and dieback can occur.
Rust Prevention & Management Prune and dispose of infected branches in the fall and winter. Try not to plant juniper species and hosts near each other.
Trees & Plants Affected by Rusts Pear, many species of juniper, apples, crabapples, quince and serviceberry are the fruiting trees susceptible to rusts. Mountain-ash, flowering quince, cotoneaster, chokeberry, and photinia are plants susceptible to rusts.
Rust Causes Pear trellis rust: Gymnosporangium sabinae a fungal disease; Cedar-apple rust: Gymnosporangium juniperivirginianae; Cedar-hawthorn rust: G. globosum; Cedar-quince rust: G. clavipes
Fruit Tree Disease – Scab
What does Scab mean for Not Far From The Tree’s Fruit Picking Program? Apple scab can cause leaf drop, which may weaken the tree and lead to decreased growth/blossom production. Fruit from a tree with scab is still edible, but NFFTT may not be able to donate fruit with scab to community agencies that offer fresh fruit to their clients.

Scab Physical Manifestations Leaves start as small, olive-green spots that turn to black. Leaves distort, turn yellow and fall early in summer. Starts on fruit as small, raised dark areas, which become large and corky. Fruits distort, crack and fall too early.
Scab Prevention & Management Rake and dispose of leaves and fruit in the fall since the disease and live in them over the winter. Compost leaves. Avoid watering the top of the tree.
Trees & Plants Affected by Scab It infects crabapples, pear (Pyrus communis) and apples (Malus spp.) Mountain ash (Sorbus spp.), and Cotoneaster (Cotoneaster spp.).
Scab Causes Caused by the fungus Venturia inaequalis.
Fruit Tree Disease – Fire Blight
What does Fire Blight mean for Not Far From The Tree’s Fruit Picking Program? Fire blight is a serious disease that causes serious damage to apple and pear trees in Ontario. While fruit may or may not become affected by the blight, the bacteria can be spread through improperly cleaned equipment. NFFTT will not be able to harvest fruit from a tree with Fire blight, but will recommend next steps for getting your tree back into good health! If not treated, Fire blight has the potential to kill your fruit tree.

Fire Blight Physical Manifestations Leaves turn brown and wilt and curl into a candy cane shape. Droplets of ooze can form on twigs. Dark cankers, or lesions, can form. Fruit may be shriveled. The tree might look burned.
Fire Blight Prevention & Management Prune the infected limbs and cut a distance much lower than the diseased area. Remove the pruned branches and dispose of them or burn them. Sterilize tools with rubbing alcohol between cuts. If caught in a later stage (when large areas are affected), consider calling an arborist to manage the disease. They will most likely conduct extensive pruning and apply a chemical or biological control agent.
Trees & Plants Affected by Fire Blight Pome fruit trees. Pear (Pyrus species) and quince (Cydonia) are susceptible; apple, crabapple (Malus species).
Related plants: hawthorn, cotoneaster, mountain ash, and firethorns are frequently damaged.
Fire Blight Causes Bacterium Erwinia amylovora
Fruit Tree Disease – Black Knot
What does Black Knot mean for Not Far From The Tree’s Fruit Picking Program? Black knot primarily impacts branches and twigs of the trees, not the fruit. There is no impact on the FPP for trees with Black Knot, but extra care must be taken to properly sort and dispose of any fruit that is damaged, moldy, or has touched infected branches.

Black Knot Physical Manifestations Knots start as light brown, warty swellings around 1cm long on new shoots. The knots turn coal black and can encase the whole limb. Boring insects might be seen on the knots. Sometimes, the branch with the knot dies after spores are released in early spring. If the branch lives, the knot keeps getting bigger and produces new spores every spring. The knot can completely encircle and girdle a branch. When this happens, the leaves beyond the gall wilt and die.
Trees & Plants Affected by Black Knot Prunus trees including ornamental, edible, and native plum and cherry trees. Peach, nectarine and apricot are less commonly infected.
Black Knot Causes Apiosporina morbosa (syn. Dibotryon morbosum) fungus.
Black Knot Prevention & Management Prune trees at least 10cm below any visible knot, since the infection can run deep. Dispose of pruned branches in plastic bags or burn them. Prune in spring before new growth to prevent spores from spreading in the wind.
Fruit Tree Pests – Codling Moth
What does Codling Moth mean for Not Far From The Tree’s Fruit Picking Program? NFFTT is not able to donate fruit with codling moth damage to most community agencies, as fruit in this condition requires processing in order to be safely consumed. If your fruit has substantial codling moth damage, NFFTT may not be able to pick your fruit.

Codling Moth Physical Manifestations
The larvae tunnel towards the apple cores and feed on the seeds, leaving small brownish, threadlike trails. Crumbly brown frass (excrement) is sometimes found at the hole where the larva exited the apple. Always check near the stem and bottom of the fruit for holes and frass.
Adult moths are medium-sized (about 3/8 inch long) and light grayish brown. The males have a distinctive band of shiny coppery scales at the end of the wings. Codling moth larva is large (up to ½ inch long), and has a pinkish body with a brownish head.
Trees & Plants Affected by Codling Moth Pome fruit trees. Pear (Pyrus species) and quince (Cydonia) are susceptible; apple, crabapple (Malus species).
Codling Moth Causes Codling moth (Cydia pomonella).
Codling Moth Prevention & Management Keep your garden or orchard regularly clean. Pick up and remove any fallen apples throughout the growing season and after harvest and place them in the trash. Do not throw away apples in places where you also store apples. Inspect your crates and the storage building for cocoons and destroy the insects. Codling moths can be trapped using a tent-shaped plastic or waxed-paper trap, hung in a tree. The most common are “delta” traps or “wing” traps.
Fruit Tree Pests – Maggot Fly
What does Maggot Fly mean for Not Far From The Tree’s Fruit Picking Program? NFFTT will not be able to harvest fruit from a tree with an apple or cherry maggot fly infestation, but will recommend next steps for getting your tree back into good health! If not treated, maggot flies have the potential to infest close to all of the fruit on your fruit tree.

Maggot Fly Physical Manifestations Damaged fruit appears knobby and misshapen with pits or blemishes on the outer surface. Damaged apples turn brown and discoloured, with streaks running through the flesh. Fruit can become soft and rotten.
Trees & Plants Affected by Maggot Fly All fruits can be affected by various types of maggot flies.
Maggot Fly Causes Rhagoletis pomonella.
Maggot Fly Prevention & Management Pick all infested fruit before the maggots emerge. Once fruit falls, clean up fallen fruit multiple times a week and dispose of them in a bag in the garbage (not compost). This interrupts the life cycle by destroying maggots before they become pupae.
Red ball sticky traps are a very effective tool, as are physical barriers.
General Tips for Pest & Disease Management

- Monitor your trees weekly to look for changes
- Research changes/problems or speak to your local expert or mentor
- Once problems are identified, implement solutions as pest and disease problems can spread quickly both within the tree and to other trees nearby
- Don’t be scared to find out what the problem is! Sometimes the solution can be as easy as just pruning a diseased branch off a tree and carefully disposing of the branch
- Consider taking a workshop on fruit tree pests and disease while your tree is still young and healthy. You’ll learn what problems to look for and how to deal with them when they arise!
Recommended Reading
- Managing Codling Moth in Home Orchards by Montana State University
- Pest and Disease Guides by Philadelphia Orchard Project